Image Tracks

The browser currently supports loading image data from Omero server hosted by 4DN data portal and Image Data Resource (IDR). An example interface after loading one image track is illustrated below:

_images/image_track_example.png

view human image data from IDR

Go the browser, choose hg38:

_images/imagetrack1.png

Go to Tracks, public data hubs, load the IDR image data hub:

_images/imagetrack2.png

You can see the browser window is load with the image track:

_images/imagetrack3.png

Click any of the image to show metadata popup:

_images/imagetrack4.png

Click View larger image button to see the image in a new panel:

_images/imagetrack5.png

Click View in Omero button in the new panel to see the image details in IDR website:

_images/imagetrack6.png

view mouse image data from 4DN

Go to the browser, load mm10 genome, since the image data is sparse in mm10, we would navigate to chr15:83831936-84793920 first:

_images/imagetrack7.png

Go to Tracks, public data hubs, load the 4DN image data hub:

_images/imagetrack8.png

You can see the image track is loaded, and you can check metadata, open image in new panel:

_images/imagetrack9.png

Besides the link to Omero server is provided, there is also a button which links you to the 4DN details page:

_images/imagetrack10.png _images/imagetrack11.png